If clearances check out ok and you did not mix up the connecting rod caps,
how bout putting a screw driver between the main journal and crank counter weight, applying a tiny amount of pressure before sunggin down the main caps, then snug them down while pressure is applied? then begin torque sequence. I usuall do this on 3 & 4th main caps. Seems to work every time.
Also check your end play clearances
Are Maincaps facing front of crank correctly?
Sorry, Gotta Ask.